|Purpose||Global health, research, education|
|Method||Donations and grants|
GISAID is a global science initiative and primary source established in 2008 that provides open-access to genomic data of influenza viruses and the coronavirus responsible for the COVID-19 pandemic. GISAID facilitates genomic epidemiology and real-time surveillance to monitor the emergence of new COVID-19 viral strains across the planet.
Since its establishment as an alternative to sharing avian influenza data via conventional public-domain archives, GISAID has been recognized for incentivizing rapid exchange of outbreak data during the H1N1 pandemic in 2009, the H7N9 epidemic in 2013, and the COVID-19 pandemic in 2020.
GISAID was recognized for its importance to global health by G20 health ministers in 2017, and in 2020 the World Health Organization chief scientist called the data-science initiative "a game changer".
The acronym GISAID found first mention in a correspondence letter published in the journal Nature in 2006, putting forward an initial aspiration of creating a "consortium" for a new Global Initiative on Sharing Avian Influenza Data, whereby its members would release data in publicly available databases up to six months after analysis and validation.
Although no essential ground rules for sharing were established, the correspondence letter was signed by over 70 leading scientists, including seven Nobel laureates, because access to the most current genetic data for the highly pathogenic H5N1 zoonotic virus was often restricted, in part due to the hesitancy of World Health Organization member states to share their virus genomes and put ownership rights at risk.
It would take another 18 months until an international consensus on actual rules of the GISAID sharing mechanism could be reached among governments and researchers. Thus, GISAID officially launched in May 2008 in Geneva on the occasion of the 61st World Health Assembly, as a publicly-accessible database rather than a consortium requiring membership.
The GISAID model of incentivizing and recognizing those who deposit data has been recommended as a model for future initiatives. Greater transparency and more timely sharing of sequence data has been a goal of many researchers and stakeholders alike. The GISAID platform spans national borders and scientific disciplines, with leaders in the fields of veterinary medicine, human medicine, bioinformatics, epidemiology, and intellectual property. This cross-disciplinary effort provides new means to communicate and share information, as each discipline has distinct interests but also shares similar goals. The Initiative came together in a way that gives credit to those submitting data and makes substantial efforts to work with and include them in collaborative analyses on viral sequence data, "further tipping the scales in favor of collaboration". The notion of sharing not just data, but also the benefits of resulting research, represented a "paradigm shift" that puts contributors from higher and lower resource environments on more equal footing.
The GISAID Initiative was initially funded by Peter Bogner—a strategic advisor and international broadcasting executive—who serves as its founder and principal facilitator. Bogner has been directing the build-up of this platform by bringing together the world's leading scientists and stakeholders who are actively committed to accelerating understanding of this potential human pandemic by rapidly sharing scientific data and results. In January 2006, Bogner met with US Secretary of Homeland Security Michael Chertoff at the World Economic Forum in Davos, Switzerland, and was told about the US government's preparedness concept on dealing with the potential of a flu pandemic. Concerns about a pandemic scenario heightened.
In November 2006, the Initiative received the endorsement of both The Royal Society and Academy of Medical Sciences. In February 2007, it was announced that GISAID and the Swiss Institute of Bioinformatics, which leads a Swiss consortium to manage the GISAID Database on influenza virus strains, had signed a cooperation agreement. Under this agreement, the Geneva-based institute was to provide services for the secure storage and analysis of genetic, epidemiological, and clinical data.
In January 2007, Indonesia stopped sharing all H5N1 clinical samples with WHO. In March 2007, Siti Fadilah Supari, Indonesia's Minister of Health, announced the Indonesian government supports the formation of the Global Initiative on Sharing Avian Influenza Database (GISAID) following a high-level WHO meeting in Jakarta on Responsible Practices for Sharing Avian Influenza Viruses. In April 2007, the Indonesian Academy of Sciences reaffirmed its endorsement of GISAID, stating it shares the same ideals regarding free exchange and responsible sharing of information of avian influenza and emerging infectious diseases.
In 2008, GISAID was adopted by “WHO Collaborating Centers for Influenza” for entering sequence data from samples received from National Influenza Centers (NICs) in the WHO Global Influenza Surveillance and Response System.
In April 2010, the Federal Republic of Germany announced during the 7th International Ministerial Conference on Avian and Pandemic Influenza in Hanoi, Vietnam, that the GISAID Initiative entered into a cooperation agreement with the German government, making Germany the long-term host of the GISAID platform. Under the agreement, Germany, represented by the Federal Ministry of Food, Agriculture and Consumer Protection BMELV, will ensure the sustainability of the initiative by providing through its Federal Office for Agriculture and Food (BLE) the technical hosting facilities of the GISAID platform and EpiFlu™ database, located in Bonn. Germany's Federal Institute for Animal Health the Friedrich Loeffler Institute (FLI) located on the Isle of Riems, will ensure the plausibility and curation of scientific data in GISAID to meet scientific standards.
On January 10, 2020, the first SARS-CoV-2 genetic sequences were released by the Chinese Center for Disease Control and Prevention and shared through GISAID. Throughout 2020, huge volumes of SARS-CoV-2 genome sequences sampled and analyzed all over the globe have been added to the GISAID database, rapidly shared by laboratories around the world.
On January 10, 2020, GISAID made sequences of SARS-CoV-2 available to those users who already had accounts to access influenza data, who could access the sequences but were prohibited from sharing them with anyone without GISAID credentials. On January 11, a post on Virological.org released the first SARS-CoV-2 genome available to the world at large. These releases enabled global responses to the pandemic, including the development of the first vaccines and diagnostic tests to detect SARS-CoV-2.
By mid-April 2021, GISAID's SARS-CoV-2 database reached over 1,200,000 submissions, a testament to the hard work of researchers in over 170 different countries. Only three months later, the number of uploaded SARS-CoV-2 sequences had doubled again, to over 2.4 million. Throughout the first year of the COVID-19 pandemic, most of the SARS-CoV-2 whole-genome sequences that were generated and shared globally were submitted through GISAID.
GISAID's governance structure provides for several organizational bodies that operate independently of each other, with the aim to guard against bias in decision-making. GISAID's administrative affairs are overseen by a board of trustees expected to minimize potential conflicts of interest concerning GISAID's funding sources. Scientific oversight of the initiative comes from its Scientific Advisory Council made up of directors of leading public health laboratories including all six WHO Collaborating Centres for Influenza, and directors of animal health reference laboratories for research on avian influenza for the World Organisation for Animal Health and the Food and Agriculture Organization of the United Nations. This governance structure is meant to improve the functional capabilities of the EpiFlu™ database managed by GISAID's Database Technical Group, composed of experts in virus sequencing and bioinformatics, who represent the user community to interact with software and developers of tools for analysis.
Access and intellectual property
A difficulty that GISAID's Data Access Agreement attempts to address is that many researchers fear sharing of influenza sequence data could facilitate its misappropriation through intellectual property claims by the vaccine industry and others, hindering access to vaccines and other items in developing countries, either through high costs or by preventing technology transfer. While most public interest experts agree with GISAID that influenza sequence data should be made public, and this is the subject of agreement by many researchers, some provide the information only after filing patent claims while others have said that access to it should be only on the condition that no patents or other intellectual property claims are filed. GISAID's Data Access Agreement addresses this directly to promote sharing data. GISAID's procedures additionally suggest that those who access the EpiFlu database consult the countries of origin of genetic sequences and the researchers who discovered the sequences. As a result, the GISAID license has changed the field of viral sequence data analysis.
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The Scientific Advisory Council (SAC) comprises leading influenza scientists with expertise in epidemiology, human and veterinary virology and bioinformatics.
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the global sampling of SARS-CoV-2 is being very capably addressed by the Global Initiative for Sharing All Influenza Data (GISAID) database
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GISAID is an essential component of COVID-19 R&D that enables real-time progress in the understanding of the geographical spread, circulation, and evolution of the SARS-CoV-2 virus
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China, Russia and other nations that have long withheld influenza-virus samples and DNA-sequencing data from the international community are also taking part in the initiative, saying it offers full transparency and, for the first time, basic protection of intellectual-property rights.
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GISAID further required that data users not only give credit to data submitters, but make maximum efforts to work with and include them in joint analyses on viral sequence data, further tipping the scales in favor of collaboration. This mandated sharing of not only data, but the benefits of research, has resulted in a paradigm shift which helps to put contributors from higher or lower resource settings on the same footing. ... Adopting a system of credit sharing similar to GISAID’s would ensure that regardless of resource setting, data depositors are incentivized and recognized.
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This heightened concern exists...
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We recommend that the UK government supports the Global Initiative on Sharing Avian Influenza Data and ensures that government and publicly funded laboratories put in place plans to publish all surveillance data (R12).
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The development of BNT162b2 was initiated on January 10, 2020, when the SARS-CoV-2 genetic sequence was released by the Chinese Center for Disease Control and Prevention and disseminated globally by the GISAID (Global Initiative on Sharing All Influenza Data) initiative.
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More than 1.2 million coronavirus genome sequences from 172 countries and territories have now been shared on a popular online data platform
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as of July 20, a total of over 2.4 million SARS-CoV-2 sequences have been submitted to GISAID
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During the first year of the pandemic, a large number of SARS-CoV-2 whole-genome sequences were generated from all around the world and shared, mostly through GISAID.
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- GISAID - Official Homepage
- Genomic epidemiology of hCoV-19 – GISAID app tracking spread of SARS-CoV-2 strains around the world
- Reuters Foundation AlertNet on Bird Flu
- Nature's mashup integrating data on avian-flu outbreaks through early 2006 from the WHO and FAO into Google Earth
- WHO Executive Board Documents on best practice for sharing influenza viruses and sequence data, January 2007
Media files used on this page
Author/Creator: Joo Chuan, Licence: CC BY-SA 4.0
GISAID President Peter Bogner and German Ministry of Agriculture State Secretary Robert Kloos (right)
This is the logo for GISAID.